Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: RARA ENSSSCG00000017475

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Description

retinoic acid receptor alpha [Source:VGNC Symbol;Acc:VGNC:92096]

Location

Primary_assembly 12: 22,047,443-22,085,673 reverse strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 3 transcripts (splice variants), 330 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000040357.3	RARA-203	2911	462aa	ENSSSCP00000035518.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480PNE7 A0A4X1UD10	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000039812.3	RARA-201	3171	459aa	ENSSSCP00000053487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BAX0 A0A4X1UBA7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000019026.5	RARA-202	2081	365aa	ENSSSCP00000018521.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U8W6 F1RXC9	-

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Summary

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