Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: UBTF ENSSSCG00000017360

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Description

upstream binding transcription factor [Source:VGNC Symbol;Acc:VGNC:108185]

Location

Primary_assembly 12: 18,989,836-19,006,129 forward strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 6 transcripts (splice variants), 203 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000063504.3	UBTF-204	2711	751aa	ENSSSCP00000058812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BRK7 A0A8D0XVV3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000018899.4	UBTF-206	4777	727aa	ENSSSCP00000018395.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0Q7Y7 F1RQY4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000053470.3	UBTF-202	4619	695aa	ENSSSCP00000035767.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZVU7 A0A8D1BFY9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000066156.3	UBTF-203	4463	643aa	ENSSSCP00000032162.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZKP9 A0A8D1X065	-
ENSSSCT00000039688.3	UBTF-201	4371	675aa	ENSSSCP00000037463.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A0M8 A0A8D0UED6	-
ENSSSCT00000058980.2	UBTF-205	2687	737aa	ENSSSCP00000046692.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AS54	-

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Summary

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