Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SP110 ENSSSCG00000016261

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Description

SP110 nuclear body protein [Source:VGNC Symbol;Acc:VGNC:96367]

Location

Primary_assembly 15: 131,169,917-131,226,544 reverse strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 9 transcripts (splice variants), 118 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038109.3	SP110-202	2345	669aa	ENSSSCP00000053159.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BAR6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000041167.2	SP110-204	2294	652aa	ENSSSCP00000056418.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BJT6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000063867.3	SP110-205	2229	627aa	ENSSSCP00000045556.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ANT5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000041160.3	SP110-208	2115	626aa	ENSSSCP00000037919.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A1X3 A0A8D0QIV0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000062509.3	SP110-206	992	218aa	ENSSSCP00000032641.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZLY8 A0A8D0WK29	-
ENSSSCT00000046122.3	SP110-209	971	211aa	ENSSSCP00000051505.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B4U8	-
ENSSSCT00000017706.5	SP110-207	696	152aa	ENSSSCP00000017225.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0WMU0 F1SMZ1	-
ENSSSCT00000047713.3	SP110-203	687	195aa	ENSSSCP00000045984.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287APV4 A0A4X1TMK6	-
ENSSSCT00000046261.3	SP110-201	657	139aa	ENSSSCP00000036524.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZXU7 A0A8D1BXQ8	-

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Summary

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