Primary_assembly 15: 47,730,506-47,861,057 reverse strand.
Sscrofa11.1:CM000826.5
This gene has 5 transcripts (splice variants), 267 orthologues and 3 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000046225.3 | - | 3858 | 780aa | ENSSSCP00000056525.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287BJ18 A0A4X1VW18 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000047207.2 | - | 3133 | 612aa | ENSSSCP00000039691.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287A6U1 A0A8D1Q028 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000050568.3 | - | 1664 | 395aa | ENSSSCP00000045120.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A481AK44 A0A8D0Y4W1 | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| ENSSSCT00000042784.3 | - | 1331 | 387aa | ENSSSCP00000036105.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A286ZWP4 A0A8D0XZP8 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000059263.3 | - | 1266 | 367aa | ENSSSCP00000049982.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287B181 A0A4X1VWS9 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
