Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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Gene: PNPLA8 ENSSSCG00000015446

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Description

patatin like phospholipase domain containing 8 [Source:VGNC Symbol;Acc:VGNC:91610]

Location

Primary_assembly 9: 108,269,830-108,320,267 reverse strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 2 transcripts (splice variants) and 280 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000016827.5	PNPLA8-202	4926	783aa	ENSSSCP00000016377.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1URR8 F1SAE7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000016828.5	PNPLA8-201	2473	682aa	ENSSSCP00000016378.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2C8I8 F1SAE6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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