Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HDAC9 ENSSSCG00000015368

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Description

histone deacetylase 9 [Source:VGNC Symbol;Acc:VGNC:109424]

Location

Primary_assembly 9: 87,449,359-88,186,961 forward strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 6 transcripts (splice variants), 231 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000033958.4	HDAC9-206	3641	1068aa	ENSSSCP00000028516.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1QF08 K7GKY8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000074847.1	HDAC9-204	6629	1018aa	ENSSSCP00000070439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RGR3 A0A8D1ZZ46	-
ENSSSCT00000033282.4	HDAC9-203	4208	613aa	ENSSSCP00000028430.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1GPU9 A0A8D2A2P6	-
ENSSSCT00000005975.5	HDAC9-202	4196	591aa	ENSSSCP00000005826.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1FBZ0 A0A8D1JS75	-
ENSSSCT00000065597.3	HDAC9-205	3738	1024aa	ENSSSCP00000054111.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TE67 A0A8D1KRK7	-
ENSSSCT00000088927.2	HDAC9-201	1994	530aa	ENSSSCP00000064726.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QIU9	-

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Summary

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