Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NR3C1 ENSSSCG00000014401

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Description

nuclear receptor subfamily 3 group C member 1 [Source:VGNC Symbol;Acc:VGNC:90883]

Location

Primary_assembly 2: 144,822,939-144,956,451 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 6 transcripts (splice variants), 279 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000044530.3	NR3C1-206	6944	842aa	ENSSSCP00000051794.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B660	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000106647.1	NR3C1-203	7638	804aa	ENSSSCP00000078198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FIR0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000104991.1	NR3C1-205	6681	696aa	ENSSSCP00000080811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FMU7	-
ENSSSCT00000049496.3	NR3C1-204	6540	802aa	ENSSSCP00000046572.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AR79	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000094813.1	NR3C1-202	3416	810aa	ENSSSCP00000074875.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F6Q8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000096719.1	NR3C1-201	2703	743aa	ENSSSCP00000077414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FGH5	-

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Summary

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