Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: IRF1 ENSSSCG00000014277

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Description

interferon regulatory factor 1 [Source:VGNC Symbol;Acc:VGNC:89203]

Location

Primary_assembly 2: 134,776,129-134,783,801 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants), 218 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000015600.6	IRF1-204	2095	322aa	ENSSSCP00000015188.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6GDS9 A0FIN4 D2KC06	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000098417.1	IRF1-201	1352	320aa	ENSSSCP00000077348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1E3Y2 A0A8W4FDF7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000055436.3	IRF1-202	1229	279aa	ENSSSCP00000057721.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6IFU7	-
ENSSSCT00000096927.1	IRF1-203	1166	258aa	ENSSSCP00000078279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FFS9	-

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Summary

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