tropomyosin 4 [Source:VGNC Symbol;Acc:VGNC:94339]
Primary_assembly 2: 61,453,725-61,476,781 reverse strand.
Sscrofa11.1:CM000813.5
This gene has 10 transcripts (splice variants), 248 orthologues and 4 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000038285.2 | TPM4-210 | 2279 | 284aa | ENSSSCP00000040331.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5S6HGR0 A0A8D0P6L0 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000075365.2 | TPM4-205 | 2164 | 231aa | ENSSSCP00000069793.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2QY33 A0A8D0PBD9 | - |
| ENSSSCT00000015127.4 | TPM4-203 | 2085 | 248aa | ENSSSCP00000014722.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D0G7F7 P67937 | - |
| ENSSSCT00000072308.2 | TPM4-204 | 1893 | 155aa | ENSSSCP00000072095.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2R6Y5 A0A8D0X2T7 | - |
| ENSSSCT00000078677.1 | TPM4-206 | 1046 | 284aa | ENSSSCP00000071679.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1V0T9 A0A5G2RIZ8 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSSSCT00000092549.1 | TPM4-207 | 1022 | 276aa | ENSSSCP00000075699.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8W4FA38 | - |
| ENSSSCT00000076243.1 | TPM4-208 | 1007 | 271aa | ENSSSCP00000069625.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1V098 A0A5G2QXH4 | - |
| ENSSSCT00000077925.1 | TPM4-201 | 980 | 233aa | ENSSSCP00000071764.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1UZ83 A0A5G2RJ42 | - |
| ENSSSCT00000097335.1 | TPM4-209 | 974 | 260aa | ENSSSCP00000079023.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8W4FHV3 | - |
| ENSSSCT00000093249.1 | TPM4-202 | 950 | 223aa | ENSSSCP00000077729.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8W4FEP1 | - |
