Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TPM4 ENSSSCG00000013849

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Description

tropomyosin 4 [Source:VGNC Symbol;Acc:VGNC:94339]

Location

Primary_assembly 2: 61,453,725-61,476,781 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 10 transcripts (splice variants), 194 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038285.2	TPM4-210	2279	284aa	ENSSSCP00000040331.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0P6L0 A0A8D1NUQ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000075365.2	TPM4-205	2164	231aa	ENSSSCP00000069793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QY33 A0A8D0PBD9	-
ENSSSCT00000015127.4	TPM4-203	2085	248aa	ENSSSCP00000014722.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D0G7F7 P67937	-
ENSSSCT00000072308.2	TPM4-204	1893	155aa	ENSSSCP00000072095.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R6Y5 A0A8D0X2T7	-
ENSSSCT00000078677.1	TPM4-206	1046	284aa	ENSSSCP00000071679.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V0T9 A0A5G2RIZ8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000092549.1	TPM4-207	1022	276aa	ENSSSCP00000075699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FA38	-
ENSSSCT00000076243.1	TPM4-208	1007	271aa	ENSSSCP00000069625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V098 A0A5G2QXH4	-
ENSSSCT00000077925.1	TPM4-201	980	233aa	ENSSSCP00000071764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UZ83 A0A5G2RJ42	-
ENSSSCT00000097335.1	TPM4-209	974	260aa	ENSSSCP00000079023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FHV3	-
ENSSSCT00000093249.1	TPM4-202	950	223aa	ENSSSCP00000077729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FEP1	-

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Summary

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