Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PIP5K1C ENSSSCG00000013490

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Description

phosphatidylinositol-4-phosphate 5-kinase type 1 gamma [Source:VGNC Symbol;Acc:VGNC:91459]

Location

Primary_assembly 2: 74,977,274-75,046,895 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 5 transcripts (splice variants), 263 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000036795.3	PIP5K1C-202	6452	702aa	ENSSSCP00000047631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AU44 A0A8D1H6M8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000014736.5	PIP5K1C-203	6419	691aa	ENSSSCP00000014338.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VRU9 F1S7Q7	-
ENSSSCT00000073481.2	PIP5K1C-201	6252	672aa	ENSSSCP00000071243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R4I1 A0A8D0VQA8	-
ENSSSCT00000064135.2	PIP5K1C-204	5045	689aa	ENSSSCP00000046234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AQ94 A0A8D0VQ56	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000030977.4	PIP5K1C-205	5004	663aa	ENSSSCP00000025376.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VT55 I3LMQ5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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