Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
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ID History
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Gene: NCLN ENSSSCG00000013475

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Description

nicalin [Source:VGNC Symbol;Acc:VGNC:90613]

Location

Primary_assembly 2: 75,369,955-75,390,545 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants) and 196 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000086182.1	NCLN-203	7315	707aa	ENSSSCP00000073890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RC05	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000014720.5	NCLN-202	4629	562aa	ENSSSCP00000014322.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1S8E9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000067121.1	NCLN-201	3032	561aa	ENSSSCP00000070175.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A481CWD2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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