Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPN1 ENSSSCG00000012999

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Description

calpain 1 [Source:VGNC Symbol;Acc:VGNC:86170]

Location

Primary_assembly 2: 6,997,985-7,022,684 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants), 225 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000014210.5	CAPN1-201	2596	775aa	ENSSSCP00000013824.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6GBZ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000059315.3	CAPN1-202	2650	653aa	ENSSSCP00000033221.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6H4P7	-
ENSSSCT00000067293.2	CAPN1-203	2641	650aa	ENSSSCP00000067028.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UXC1 Q9N0M7	-

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Summary

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