Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MCF2 ENSSSCG00000012712

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Description

MCF.2 cell line derived transforming sequence [Source:VGNC Symbol;Acc:VGNC:90067]

Location

Primary_assembly X: 114,258,074-114,356,156 reverse strand.

Sscrofa11.1:CM000830.5

About this gene

This gene has 5 transcripts (splice variants), 258 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000013898.5	MCF2-205	3283	1082aa	ENSSSCP00000013515.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RQ74	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000046935.3	MCF2-201	5024	1013aa	ENSSSCP00000049840.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B0A9 A0A4X1SJE6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000040389.3	MCF2-203	4964	974aa	ENSSSCP00000032138.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZKQ2 A0A4X1SJQ9	-
ENSSSCT00000035970.2	MCF2-202	4925	952aa	ENSSSCP00000028646.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SJB6 K7GLB7	-
ENSSSCT00000046460.3	MCF2-204	4814	1034aa	ENSSSCP00000050996.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B412	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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