Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PDZD11 ENSSSCG00000012378

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Description

PDZ domain containing 11 [Source:VGNC Symbol;Acc:VGNC:91294]

Location

Primary_assembly X: 56,312,754-56,319,405 reverse strand.

Sscrofa11.1:CM000830.5

About this gene

This gene has 2 transcripts (splice variants), 221 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000013535.6	PDZD11-202	3406	167aa	ENSSSCP00000013173.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0IPC5 A0A8D0UZ35	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000035515.4	PDZD11-201	619	152aa	ENSSSCP00000029576.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QTY3 A0A8D0WQS5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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