Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
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ID History
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Gene: APOD ENSSSCG00000011831

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Description

apolipoprotein D [Source:VGNC Symbol;Acc:VGNC:85422]

Location

Primary_assembly 13: 132,514,949-132,562,599 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 3 transcripts (splice variants) and 410 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000033009.3	APOD-201	1684	228aa	ENSSSCP00000029314.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1TWC1 A0A8D1GD54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000056505.3	APOD-202	1731	176aa	ENSSSCP00000059465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BS37 A0A4X1U4K0	-
ENSSSCT00000012943.5	APOD-203	1253	190aa	ENSSSCP00000012602.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U1N6 F1SQX9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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