Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PLOD2 ENSSSCG00000011689

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Description

procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Source:VGNC Symbol;Acc:VGNC:91567]

Location

Primary_assembly 13: 86,401,244-86,513,105 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 4 transcripts (splice variants), 212 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000012797.4	PLOD2-203	3967	760aa	ENSSSCP00000012459.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0ZY95 F1SKE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000066221.2	PLOD2-204	4933	739aa	ENSSSCP00000056803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BJL8 A0A4X1T462	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000063335.3	PLOD2-202	3923	703aa	ENSSSCP00000044984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AM48 A0A4X1T494	-
ENSSSCT00000045532.3	PLOD2-201	3391	705aa	ENSSSCP00000039061.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A5M0 A0A8D1JHC2	-

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Summary

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