Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PDCD6IP ENSSSCG00000011237

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Description

programmed cell death 6 interacting protein [Source:VGNC Symbol;Acc:VGNC:106452]

Location

Primary_assembly 13: 19,597,059-19,665,996 forward strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 3 transcripts (splice variants) and 23 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000057076.2	PDCD6IP-202	6050	878aa	ENSSSCP00000043173.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AH24	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000012304.5	PDCD6IP-201	3045	758aa	ENSSSCP00000011985.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1DED3 F1RRD6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000049951.3	PDCD6IP-203	2472	756aa	ENSSSCP00000039055.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A5B4 A0A8D1DEI2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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