Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLASP2 ENSSSCG00000011236

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Description

cytoplasmic linker associated protein 2 [Source:VGNC Symbol;Acc:VGNC:86720]

Location

Primary_assembly 13: 19,305,181-19,510,585 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 10 transcripts (splice variants), 228 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000051993.3	CLASP2-210	6479	1530aa	ENSSSCP00000040711.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AA01 A0A8D1S3M8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000012303.5	CLASP2-207	6416	1515aa	ENSSSCP00000011984.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2C292 F1RRD7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000057422.3	CLASP2-208	6389	1506aa	ENSSSCP00000053863.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BBG3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000050795.3	CLASP2-209	6389	1506aa	ENSSSCP00000042331.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AEM4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000025077.4	CLASP2-206	6169	1436aa	ENSSSCP00000026339.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LQF9	-
ENSSSCT00000051840.3	CLASP2-203	5928	1287aa	ENSSSCP00000050619.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B3E4	-
ENSSSCT00000036852.3	CLASP2-202	5695	1304aa	ENSSSCP00000044161.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AJG9	-
ENSSSCT00000048328.2	CLASP2-205	5661	1294aa	ENSSSCP00000041346.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AC13	-
ENSSSCT00000045239.3	CLASP2-204	5098	1273aa	ENSSSCP00000059016.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BS64	-
ENSSSCT00000058953.3	CLASP2-201	1712	429aa	ENSSSCP00000031517.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZIY7	-

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Summary

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