Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL6A5 ENSSSCG00000011186

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Description

collagen type VI alpha 5 chain [Source:VGNC Symbol;Acc:VGNC:86879]

Location

Primary_assembly 13: 2,029,959-2,174,384 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 5 transcripts (splice variants), 147 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000049694.3	COL6A5-204	7564	2337aa	ENSSSCP00000056442.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BK35	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000100016.1	COL6A5-205	7564	2337aa	ENSSSCP00000078510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FGF1	-
ENSSSCT00000058938.3	COL6A5-201	5437	1745aa	ENSSSCP00000043192.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AH58	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000042220.2	COL6A5-202	5413	1737aa	ENSSSCP00000037688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A1T6	-
ENSSSCT00000103313.1	COL6A5-203	5398	1732aa	ENSSSCP00000078951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKX5	-

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Summary

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