Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ITGB1 ENSSSCG00000011101

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Description

integrin subunit beta 1 [Source:VGNC Symbol;Acc:VGNC:96381]

Location

Primary_assembly 10: 56,078,396-56,173,326 reverse strand.

Sscrofa11.1:CM000821.5

About this gene

This gene has 4 transcripts (splice variants), 299 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000033219.4	ITGB1-202	3742	853aa	ENSSSCP00000030050.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2BWT9 K7GQ83	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000034074.4	ITGB1-203	6793	801aa	ENSSSCP00000029594.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TP89 K7GNY7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000035813.4	ITGB1-204	3773	798aa	ENSSSCP00000030775.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TP84 A0A8D1S944	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000012148.5	ITGB1-201	3625	814aa	ENSSSCP00000011838.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1EJJ9 A0A8D2BWT5	-

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Summary

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