Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPRE ENSSSCG00000010755

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Description

protein tyrosine phosphatase receptor type E [Source:VGNC Symbol;Acc:VGNC:91986]

Location

Primary_assembly 14: 137,101,555-137,264,238 forward strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 6 transcripts (splice variants), 275 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000078050.2	PTPRE-204	3925	741aa	ENSSSCP00000065674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R524	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000102370.1	PTPRE-206	5049	724aa	ENSSSCP00000079914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKQ5	-
ENSSSCT00000011767.5	PTPRE-205	5007	701aa	ENSSSCP00000011465.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1KJ71 F1SDK4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000084273.2	PTPRE-202	5001	720aa	ENSSSCP00000065855.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R5J4	-
ENSSSCT00000063056.3	PTPRE-203	3660	602aa	ENSSSCP00000039923.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A7G5 A0A8D1GZP3	-
ENSSSCT00000051338.3	PTPRE-201	2129	642aa	ENSSSCP00000045124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AMI7 A0A8D1BDZ2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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