Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SHTN1 ENSSSCG00000010665

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Description

shootin 1 [Source:VGNC Symbol;Acc:VGNC:92862]

Location

Primary_assembly 14: 127,064,397-127,175,227 reverse strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000011666.4	SHTN1-204	4631	631aa	ENSSSCP00000011364.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0X225 F1S4S1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000078092.1	SHTN1-202	5016	573aa	ENSSSCP00000067263.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QZ91 A0A8D0I2Z9	-
ENSSSCT00000088932.2	SHTN1-201	4833	551aa	ENSSSCP00000062017.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QEC6	-
ENSSSCT00000075331.2	SHTN1-203	3722	456aa	ENSSSCP00000073323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R7T6 A0A8D0LEE6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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