Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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- Orthologues
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Gene: HPS4 ENSSSCG00000009960

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Description

HPS4 biosis of lysosomal organelles complex 3 subunit 2 [Source:VGNC Symbol;Acc:VGNC:88966]

Location

Primary_assembly 14: 44,049,707-44,073,621 reverse strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 3 transcripts (splice variants) and 201 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000045539.3	HPS4-202	3825	703aa	ENSSSCP00000043326.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SJE4 A5A773	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000038653.3	HPS4-203	3819	701aa	ENSSSCP00000038336.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A322	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000010915.4	HPS4-201	3020	664aa	ENSSSCP00000010630.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1XRL1 F6PS65	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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