Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLIP1 ENSSSCG00000009793

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Description

CAP-Gly domain containing linker protein 1 [Source:VGNC Symbol;Acc:VGNC:86766]

Location

Primary_assembly 14: 30,320,958-30,467,657 forward strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 4 transcripts (splice variants), 230 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000054885.3	CLIP1-201	9097	2193aa	ENSSSCP00000052590.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B7U5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000010735.5	CLIP1-202	9097	2193aa	ENSSSCP00000010455.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UDI1 F1REW5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSSSCT00000047921.2	CLIP1-204	8737	1219aa	ENSSSCP00000051610.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B5N9 A0A8D1JIN1	-
ENSSSCT00000059890.3	CLIP1-203	6634	1402aa	ENSSSCP00000042678.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AF75	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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