Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PDLIM5 ENSSSCG00000009192

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Description

PDZ and LIM domain 5 [Source:VGNC Symbol;Acc:VGNC:91284]

Location

Primary_assembly 8: 125,044,028-125,259,945 reverse strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 6 transcripts (splice variants), 274 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000049419.3	PDLIM5-203	2282	626aa	ENSSSCP00000038452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A3D2 A0A8D0YI22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000101753.1	PDLIM5-204	5092	601aa	ENSSSCP00000078578.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0S141 A0A8W4FI68	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000050300.3	PDLIM5-205	5077	596aa	ENSSSCP00000037760.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A1G4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000010065.5	PDLIM5-206	5071	497aa	ENSSSCP00000009802.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0S0N4 F1RWW4	-
ENSSSCT00000048771.3	PDLIM5-201	1979	239aa	ENSSSCP00000039708.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A7G2 A0A8D0YJC1	-
ENSSSCT00000038022.3	PDLIM5-202	1944	214aa	ENSSSCP00000045746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BI36 A0A4X1UCF4	-

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Summary

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