Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SDC1 ENSSSCG00000008601

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Description

syndecan 1 [Source:VGNC Symbol;Acc:VGNC:92654]

Location

Primary_assembly 3: 117,987,557-118,011,884 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 2 transcripts (splice variants), 133 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000033465.4	SDC1-202	3111	309aa	ENSSSCP00000029408.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U4Q2 K7GNF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000055325.3	SDC1-201	2789	295aa	ENSSSCP00000049762.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B0S3 A0A8D0QSM9	-

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Summary

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