Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CIITA ENSSSCG00000007901

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Description

class II major histocompatibility complex transactivator [Source:VGNC Symbol;Acc:VGNC:86701]

Location

Primary_assembly 3: 32,172,214-32,230,780 reverse strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 4 transcripts (splice variants), 140 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000036772.3	CIITA-204	4874	1127aa	ENSSSCP00000055809.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VQQ6 K9IVS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000047795.2	CIITA-201	8166	1123aa	ENSSSCP00000059439.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BSE3 A0A8D2AD86	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000008657.5	CIITA-202	2531	565aa	ENSSSCP00000008434.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1GG61 F1RL12	-
ENSSSCT00000033869.4	CIITA-203	2495	553aa	ENSSSCP00000029475.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1WSZ2 K7GNM0	-

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Summary

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