Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
  - Orthologues
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Ontologies
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Gene: UBOX5 ENSSSCG00000007162

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Description

U-box domain containing 5 [Source:VGNC Symbol;Acc:VGNC:95860]

Location

Primary_assembly 17: 32,546,712-32,561,533 forward strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 2 transcripts (splice variants) and 192 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000050369.3	UBOX5-202	2383	541aa	ENSSSCP00000056934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BLI6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000051844.3	UBOX5-201	1673	487aa	ENSSSCP00000055748.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BI51 A0A8D1ZNR8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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