Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SHC1 ENSSSCG00000006539

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Description

SHC adaptor protein 1 [Source:VGNC Symbol;Acc:VGNC:92837]

Location

Primary_assembly 4: 94,810,875-94,831,765 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 2 transcripts (splice variants), 211 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000034547.3	SHC1-202	3516	583aa	ENSSSCP00000028571.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5K1V5Y3 A0A8D1ZGN1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000007161.6	SHC1-201	3375	474aa	ENSSSCP00000006968.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1G301 A0A8D1G8T8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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