Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: POU2F1 ENSSSCG00000006310

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Description

POU class 2 homeobox 1 [Source:VGNC Symbol;Acc:VGNC:91672]

Location

Primary_assembly 4: 83,596,269-83,776,430 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 5 transcripts (splice variants), 235 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000062507.3	POU2F1-204	2574	768aa	ENSSSCP00000056861.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BKD1 A0A8D0RPU8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000006917.4	POU2F1-201	2973	757aa	ENSSSCP00000006729.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1H765 F1S265	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000084051.2	POU2F1-203	2663	745aa	ENSSSCP00000069232.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VDX5 A0A5G2REE5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000053018.3	POU2F1-202	2412	722aa	ENSSSCP00000054624.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BEW7 A0A8D0ZS45	-
ENSSSCT00000076744.2	POU2F1-205	2385	705aa	ENSSSCP00000072701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VBL9 A0A5G2R629	-

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Summary

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