Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RUNX1T1 ENSSSCG00000006115

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Description

RUNX1 partner transcriptional co-repressor 1 [Source:VGNC Symbol;Acc:VGNC:96594]

Location

Primary_assembly 4: 44,599,760-44,743,418 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 5 transcripts (splice variants), 205 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000006707.5	RUNX1T1-203	2567	691aa	ENSSSCP00000006525.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RY37	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000037553.3	RUNX1T1-205	3409	584aa	ENSSSCP00000055188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BF47 A0A4X1UC80	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000054962.3	RUNX1T1-204	2592	561aa	ENSSSCP00000040759.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A9Z0 A0A8D1YTN1	-
ENSSSCT00000059899.3	RUNX1T1-201	2515	577aa	ENSSSCP00000056352.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BJU7 A0A4X1U9K3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000095606.1	RUNX1T1-202	2416	662aa	ENSSSCP00000075828.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F8X1	-

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Summary

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