Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LAPTM4B ENSSSCG00000006083

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Description

lysosomal protein transmembrane 4 beta [Source:VGNC Symbol;Acc:VGNC:89637]

Location

Primary_assembly 4: 38,932,742-39,023,925 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 3 transcripts (splice variants), 295 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000075100.1	LAPTM4B-201	2164	285aa	ENSSSCP00000060829.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QFM1 A0A8D0V089	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000077864.1	LAPTM4B-202	1799	226aa	ENSSSCP00000073962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480K595 A0A4X1U108	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000006674.4	LAPTM4B-203	1773	224aa	ENSSSCP00000006495.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0PJZ4 F1S0L9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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