Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PBX3 ENSSSCG00000005604

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Description

PBX homeobox 3 [Source:VGNC Symbol;Acc:VGNC:91205]

Location

Primary_assembly 1: 266,382,640-266,610,640 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 5 transcripts (splice variants), 105 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000060134.2	PBX3-203	2819	454aa	ENSSSCP00000038938.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A4R8 A0A8D0NX02	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000006162.4	PBX3-204	2759	434aa	ENSSSCP00000006003.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U969 F1RS30	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000049117.3	PBX3-202	2710	351aa	ENSSSCP00000036743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZZ07 A0A4X1UBL5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000065500.3	PBX3-205	2480	341aa	ENSSSCP00000047963.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AVR9	-
ENSSSCT00000089144.2	PBX3-201	1454	386aa	ENSSSCP00000059909.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q778	-

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Summary

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