valosin containing protein [Source:VGNC Symbol;Acc:VGNC:109420]
Primary_assembly 1: 235,851,206-235,869,634 reverse strand.
Sscrofa11.1:CM000812.5
This gene has 5 transcripts (splice variants), 228 orthologues and 5 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000090983.1 | VCP-201 | 2490 | 829aa | ENSSSCP00000073474.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2RLZ5 A0A8D1YIJ1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000089380.2 | VCP-202 | 6280 | 817aa | ENSSSCP00000070768.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2R0Y0 A0A8D1LSH7 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000005837.4 | VCP-205 | 3505 | 820aa | ENSSSCP00000005692.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1VYX7 F1SIH8 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000063020.3 | VCP-204 | 2971 | 737aa | ENSSSCP00000034520.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A286ZSB5 | - |
| ENSSSCT00000054632.3 | VCP-203 | 2347 | 716aa | ENSSSCP00000035359.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A286ZUM8 | - |
