Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TCF4 ENSSSCG00000004535

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Description

transcription factor 4 [Source:VGNC Symbol;Acc:VGNC:93823]

Location

Primary_assembly 1: 104,719,151-105,079,919 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 5 transcripts (splice variants), 213 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000065036.3	TCF4-205	2785	758aa	ENSSSCP00000031205.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZI80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000042622.3	TCF4-203	2550	607aa	ENSSSCP00000036879.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZZI1 A0A8D1SPK7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000061115.3	TCF4-202	2397	686aa	ENSSSCP00000038651.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480T5E4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000036325.4	TCF4-204	2352	664aa	ENSSSCP00000030707.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0HX01 A0A8D0P227	-
ENSSSCT00000053584.2	TCF4-201	2249	511aa	ENSSSCP00000038344.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A3L5 A0A8D1VS53	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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