Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PNKP ENSSSCG00000003195

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Description

polynucleotide kinase 3'-phosphatase [Source:VGNC Symbol;Acc:VGNC:91595]

Location

Primary_assembly 6: 54,867,637-54,881,088 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 5 transcripts (splice variants), 188 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000080633.2	PNKP-203	1936	562aa	ENSSSCP00000061126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QGK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000071340.2	PNKP-205	6531	486aa	ENSSSCP00000073393.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R7Z7	-
ENSSSCT00000069481.2	PNKP-204	5868	537aa	ENSSSCP00000070518.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R8S0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000003550.5	PNKP-201	1629	491aa	ENSSSCP00000003467.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VWY1 F1RHU1	-
ENSSSCT00000087533.2	PNKP-202	1612	475aa	ENSSSCP00000070485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RGV0	-

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Summary

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