Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: IRF9 ENSSSCG00000002002

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Description

interferon regulatory factor 9 [Source:NCBI gene (formerly Entrezgene);Acc:780415]

Location

Primary_assembly 7: 75,126,622-75,139,640 reverse strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 3 transcripts (splice variants), 272 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000078182.2	IRF9-202	1821	418aa	ENSSSCP00000061619.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QC28 A0A8D1G4V5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000088900.2	IRF9-203	3804	411aa	ENSSSCP00000074399.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RH09 A0A8D1Q147	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000002240.6	IRF9-201	1384	377aa	ENSSSCP00000002188.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SGN2	-

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Summary

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