Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RABGGTA ENSSSCG00000001992

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Description

Rab geranylgeranyltransferase subunit alpha [Source:VGNC Symbol;Acc:VGNC:92046]

Location

Primary_assembly 7: 75,021,755-75,028,875 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 3 transcripts (splice variants), 181 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000084630.1	RABGGTA-202	2738	569aa	ENSSSCP00000070122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R7L5 A0A8D1Q9E8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000002230.4	RABGGTA-203	2837	567aa	ENSSSCP00000002178.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5A779	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000106250.1	RABGGTA-201	1746	536aa	ENSSSCP00000074707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1ZBV8 A0A8W4F6F2	-

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Summary

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