Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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ID History
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Gene: SCAPER ENSSSCG00000001865

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Description

S-phase cyclin A associated protein in the ER [Source:VGNC Symbol;Acc:VGNC:92611]

Location

Primary_assembly 7: 56,583,160-57,011,914 reverse strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 6 transcripts (splice variants) and 207 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000040228.3	SCAPER-202	4730	1408aa	ENSSSCP00000038079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A2B1 A0A4X1TUK8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000090036.1	SCAPER-204	6780	1376aa	ENSSSCP00000063298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QG97	-
ENSSSCT00000082477.1	SCAPER-206	5652	1298aa	ENSSSCP00000071611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R3E6	-
ENSSSCT00000002090.5	SCAPER-203	4721	1402aa	ENSSSCP00000002040.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SJ94	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000056817.3	SCAPER-205	4550	1345aa	ENSSSCP00000044592.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AL12	-
ENSSSCT00000079135.2	SCAPER-201	1012	76aa	ENSSSCP00000068919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R3Z9 A0A8D0XVP9	-

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Summary

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