Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RXRB ENSSSCG00000001474

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Description

retinoid X receptor beta [Source:VGNC Symbol;Acc:VGNC:92529]

Location

Primary_assembly 7: 25,236,004-25,242,875 reverse strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 6 transcripts (splice variants), 286 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000001642.5	RXRB-204	2923	536aa	ENSSSCP00000001600.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0VA87 F6PWE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000107634.1	RXRB-201	2927	532aa	ENSSSCP00000082027.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UQM7 A5D9P3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000107635.1	RXRB-202	2649	507aa	ENSSSCP00000082028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000052664.3	RXRB-206	2602	419aa	ENSSSCP00000054656.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0UFA5 A0A8D1STN2	-
ENSSSCT00000107637.1	RXRB-205	2738	161aa	ENSSSCP00000082030.1	Nonsense mediated decay	-	-
ENSSSCT00000107636.1	RXRB-203	2475	78aa	ENSSSCP00000082029.1	Nonsense mediated decay	-	-

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Summary

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