DExD-box helicase 39B [Source:VGNC Symbol;Acc:VGNC:109422]
Primary_assembly 7: 23,658,086-23,669,046 reverse strand.
Sscrofa11.1:CM000818.5
This gene has 12 transcripts (splice variants), 152 orthologues and 38 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000042719.4 | DDX39B-211 | 1713 | 429aa | ENSSSCP00000041973.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287ADC3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSSSCT00000032673.5 | DDX39B-210 | 2137 | 428aa | ENSSSCP00000031099.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B9TSQ2 K7GT57 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000107775.1 | DDX39B-212 | 1764 | 428aa | ENSSSCP00000082163.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B9TSQ2 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000001529.6 | DDX39B-201 | 1687 | 428aa | ENSSSCP00000001487.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B9TSQ2 Q29024 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000046178.4 | DDX39B-206 | 1601 | 428aa | ENSSSCP00000054460.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287BD57 B9TSQ2 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000107771.1 | DDX39B-204 | 3319 | 75aa | ENSSSCP00000082160.1 | Nonsense mediated decay | - | - |
| ENSSSCT00000107772.1 | DDX39B-207 | 2441 | 317aa | ENSSSCP00000082161.1 | Nonsense mediated decay | A0A8D0Z0E2 | - |
| ENSSSCT00000107770.1 | DDX39B-203 | 1789 | 75aa | ENSSSCP00000082159.1 | Nonsense mediated decay | - | - |
| ENSSSCT00000107773.1 | DDX39B-208 | 1703 | 267aa | ENSSSCP00000082162.1 | Nonsense mediated decay | - | - |
| ENSSSCT00000037196.4 | DDX39B-202 | 4192 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
| ENSSSCT00000107774.1 | DDX39B-209 | 3863 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
| ENSSSCT00000037952.4 | DDX39B-205 | 3722 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
