Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NR1H4 ENSSSCG00000000875

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Description

nuclear receptor subfamily 1 group H member 4 [Source:VGNC Symbol;Acc:VGNC:90872]

Location

Primary_assembly 5: 83,604,294-83,684,604 reverse strand.

Sscrofa11.1:CM000816.5

About this gene

This gene has 5 transcripts (splice variants), 389 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000050577.2	NR1H4-201	2387	482aa	ENSSSCP00000037758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A1X6 A0A8D0VZF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000090682.2	NR1H4-204	5484	472aa	ENSSSCP00000065910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SW18 A0A8D0TM09	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000084044.2	NR1H4-205	5343	425aa	ENSSSCP00000066953.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SU26 A0A8D1UPU4	-
ENSSSCT00000000958.5	NR1H4-202	2304	449aa	ENSSSCP00000000938.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0VZF5 F1SRH0	-
ENSSSCT00000066726.2	NR1H4-203	1933	439aa	ENSSSCP00000063172.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QM46	-

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Summary

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