Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX5 ENSSSCG00000000567

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Description

SRY-box transcription factor 5 [Source:VGNC Symbol;Acc:VGNC:93357]

Location

Primary_assembly 5: 49,504,551-50,161,558 forward strand.

Sscrofa11.1:CM000816.5

About this gene

This gene has 5 transcripts (splice variants), 216 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000000609.4	SOX5-202	2804	763aa	ENSSSCP00000000595.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1XIE4 F1SFJ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000000610.5	SOX5-203	2845	753aa	ENSSSCP00000000596.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VGH8 F1SFJ1	-
ENSSSCT00000071491.2	SOX5-201	2751	715aa	ENSSSCP00000065084.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VCF7 A0A5G2R3G2	-
ENSSSCT00000087945.2	SOX5-205	2705	642aa	ENSSSCP00000060423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VHH7 A0A5G2QQ61	-
ENSSSCT00000072220.2	SOX5-204	913	229aa	ENSSSCP00000069755.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R039	-

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Summary

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