Transcript: ENSRNOT00000087737.3 Shld2-202

Description

shieldin complex subunit 2 [Source:RGD Symbol;Acc:1565067]

Gene Synonyms

Fam35a, LOC364514, RGD1310009

Location

Primary_assembly 16: 9,554,928-9,588,510 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features, is associated with 311 variant alleles and maps to 121 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000059057.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000085012.3	Shld2-201	3032	911aa	ENSRNOP00000073233.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZH67	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000148523.1	Shld2-204	3559	850aa	ENSRNOP00000106916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000100122.2	Shld2-203	3532	841aa	ENSRNOP00000080208.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZP43	-
ENSRNOT00000087737.3	Shld2-202	2924	875aa	ENSRNOP00000069549.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5FVM8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,924 bps, Translation length: 875 residues

Version

ENSRNOT00000087737.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSRNOT00000087737.3 Shld2-202

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Transcript: ENSRNOT00000087737.3 Shld2-202

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