Transcript: ENSRNOT00000086130.3 Ptch1-202

Description

patched 1 [Source:RGD Symbol;Acc:621425]

Gene Synonyms

LOC290961, Ptch, Ptch2

Location

About this transcript

This transcript has 24 exons, is annotated with 65 domains and features, is associated with 36 variant alleles and maps to 297 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000026287.7	Ptch1-201	7634	1434aa	ENSRNOP00000026287.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6UY90	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000086130.3	Ptch1-202	7044	1382aa	ENSRNOP00000069422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVB8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 7,044 bps, Translation length: 1,382 residues

Version

ENSRNOT00000086130.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.