Transcript: ENSRNOT00000080012.2 Scamp5-201

Description

secretory carrier membrane protein 5 [Source:RGD Symbol;Acc:68356]

Gene Synonyms

LOC100360612

Location

About this transcript

This transcript has 8 exons, is annotated with 9 domains and features, is associated with 102 variant alleles and maps to 141 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000080012.2	Scamp5-201	1149	235aa	ENSRNOP00000072922.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K464	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000089602.2	Scamp5-202	881	234aa	ENSRNOP00000074421.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K806	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 1,149 bps, Translation length: 235 residues

Version

ENSRNOT00000080012.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.