Transcript: ENSRNOT00000074488.3 Otx2-201

Description

orthodenticle homeobox 2 [Source:RGD Symbol;Acc:1305705]

Gene Synonyms

LOC100911492, LOC305858

Location

About this transcript

This transcript has 5 exons, is annotated with 23 domains and features, is associated with 30 variant alleles and maps to 147 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000074488.3	Otx2-201	2838	297aa	ENSRNOP00000064262.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R4H6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000085910.2	Otx2-202	2339	289aa	ENSRNOP00000073390.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F2Z3S7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 2,838 bps, Translation length: 297 residues

Version

ENSRNOT00000074488.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.