Transcript: ENSRNOT00000074211.3 Capns1-202

Description

calpain, small subunit 1 [Source:RGD Symbol;Acc:2270]

Gene Synonyms

CDPS, CSS1, Capn4, LOC100912380

Location

Primary_assembly 1: 94,572,083-94,581,269 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 9 domains and features, is associated with 170 variant alleles and maps to 314 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000067065.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000072756.3	Capns1-201	1576	349aa	ENSRNOP00000067513.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0RD20	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000122480.1	Capns1-205	1637	346aa	ENSRNOP00000106268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000075236.4	Capns1-203	1365	260aa	ENSRNOP00000064672.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R5K3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000081362.3	Capns1-204	1330	255aa	ENSRNOP00000073819.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K6H7	-
ENSRNOT00000074211.3	Capns1-202	1280	256aa	ENSRNOP00000064489.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R533	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,280 bps, Translation length: 256 residues

Version

ENSRNOT00000074211.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000074211.3 Capns1-202

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Transcript: ENSRNOT00000074211.3 Capns1-202

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