Transcript: ENSRNOT00000070962.5 Jarid2-201

Description

jumonji and AT-rich interaction domain containing 2 [Source:RGD Symbol;Acc:1591663]

Gene Synonyms

LOC681740

Location

Primary_assembly 17: 19,983,217-20,161,970 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 44 domains and features, is associated with 458 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000045918.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000128989.1	Jarid2-203	5710	1281aa	ENSRNOP00000112380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000070962.5	Jarid2-201	5895	1234aa	ENSRNOP00000067055.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6J730 M0RBV7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000122788.1	Jarid2-202	5638	1257aa	ENSRNOP00000100119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 5,895 bps, Translation length: 1,234 residues

Version

ENSRNOT00000070962.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSRNOT00000070962.5 Jarid2-201

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Transcript: ENSRNOT00000070962.5 Jarid2-201

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