Transcript: ENSRNOT00000067217.6 Ccdc88b-201

Description

coiled-coil domain containing 88B [Source:RGD Symbol;Acc:1311475]

Gene Synonyms

LOC293698, RGD1311475

Location

Primary_assembly 1: 213,465,889-213,482,098 reverse strand.

About this transcript

This transcript has 27 exons, is annotated with 39 domains and features, is associated with 114 variant alleles and maps to 208 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000024931.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000067217.6	Ccdc88b-201	5181	1476aa	ENSRNOP00000061991.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZTC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000095249.2	Ccdc88b-202	5290	1396aa	ENSRNOP00000092093.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AV75	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000099408.2	Ccdc88b-203	4595	1460aa	ENSRNOP00000089552.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A904	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 5,181 bps, Translation length: 1,476 residues

Version

ENSRNOT00000067217.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSRNOT00000067217.6 Ccdc88b-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSRNOT00000067217.6 Ccdc88b-201

Summary

About Us

Get help

Our sister sites

Follow us